SPOILERS AHEAD: I don't know how to blank shit out so MTT edit this if need be.
I don't mind the fact that boss fights can't be avoided and you have to kill them. Know why? They tried to kill Adam and tossed the fool through hella glass and shit, damn near killed him and fucked his life up so hell yeah, I want to kill them. Yeah, it would have been slick and sick to do some MGS type shit where you can knock bosses out, and the OG deus ex was full of choice but fuck that.
BTW, I beat the second boss really easy. Had a fully maxed out typhoon, hit it like twice and she went down.